PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF066400010CFD_t1
Common NameTRAES_3BF066400010CFD_c1, Vp-1B, Vp-1Bb
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 688aa    MW: 72802.1 Da    PI: 8.4572
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF066400010CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.99.2e-19532628295
                              EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                       B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvF 82 
                              +kvl++sdv+++gr+vlpkk ae+h  ++k+  ++ + +ed  ++++W++++++  ++ks++y+l+ ++ +Fv++n+L+egDf+v+
  TRAES3BF066400010CFD_t1 532 QKVLKQSDVGTLGRIVLPKKEAETHlpELKTGDGISIPIEDiGTSQVWSMRYRFwpNNKSRMYLLE-NTGDFVRSNELQEGDFIVL 616
                              79*************************99999*********7777*******99777777777777.******************* PP

                              EE-SS.SEE..EEE CS
                       B3  83 kldgr.sefelvvk 95 
                              +  ++ ++++++++
  TRAES3BF066400010CFD_t1 617 Y--SDvKSGKYLIR 628
                              *..55588877776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-27524637IPR015300DNA-binding pseudobarrel domain
CDDcd100154.35E-30529630No hitNo description
SuperFamilySSF1019368.5E-22530626IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.137531633IPR003340B3 DNA binding domain
SMARTSM010194.1E-18531633IPR003340B3 DNA binding domain
PfamPF023622.7E-15532627IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MDASAGSSPP RHSQGDAPRR GGPHRGKGPA VEIRQGEDDF MFAQDTFPAL PDFPCLSSPS  60
SSTFSSSSSS NSSSAFAAPA GAGGRGAEGA RGEPSEPAAA GDGMDDLSDI DHLLDFASIN  120
DDVPWDDEPL FPDVGMMLED VISEQQLQQP PAGHGTAGRT ASHAASGGGE DAFMGGGGTG  180
SAADDLPLFF MEWLKNNRDC ISAEDLRSIR LRRSTIEAAA ARLGGGRQGT MQLLKLILTW  240
VQNHHLQKKR PRVGAMDQEA PPAGGQLPSP GANPGYEFPA ETGAAAATSW MPYQAFSPTG  300
SYGGEAIYPF QQGCSTSSVA VSSQPFSPPA APDMHAGAWP LQYAAFVPAG ATSAGTQTYP  360
MPPPGAVPQP FAAPGFAGQF PQRMEPAATR EARKKRMARQ RRLSCLQQQR SQQLNLSQIQ  420
TGGFPQEQSP RAAHSAPVTP PSSGWGGLWT QQAVQGQLMV QVPNPLSTKS NSSRQKQQKP  480
SPDAAARPPS GGAATPHRPG QASASNKQRQ QGARTPAAAP AAGDKNLRFL LQKVLKQSDV  540
GTLGRIVLPK KEAETHLPEL KTGDGISIPI EDIGTSQVWS MRYRFWPNNK SRMYLLENTG  600
DFVRSNELQE GDFIVLYSDV KSGKYLIRGV KVRAQQDLAK HKNASPEKGG ASDVKAGGED  660
GGCKEKSPHG VRRSRQEASS MNQMAVSI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ6405590.0FJ640559.1 Triticum aestivum cultivar Zhongyou 9507 VIVIPAROUS1 protein (Vp-1B) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006645206.10.0PREDICTED: LOW QUALITY PROTEIN: B3 domain-containing protein VP1
SwissprotP373980.0VIV_ORYSJ; B3 domain-containing protein VP1
TrEMBLA1XPK80.0A1XPK8_WHEAT; Uncharacterized protein
STRINGMLOC_69727.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75293443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.15e-59B3 family protein
Publications ? help Back to Top
  1. Yang Y, et al.
    Isolation and characterization of Viviparous-1 genes in wheat cultivars with distinct ABA sensitivity and pre-harvest sprouting tolerance.
    J. Exp. Bot., 2007. 58(11): p. 2863-71
    [PMID:17630295]
  2. Yang Y, et al.
    Development and validation of a Viviparous-1 STS marker for pre-harvest sprouting tolerance in Chinese wheats.
    Theor. Appl. Genet., 2007. 115(7): p. 971-80
    [PMID:17712543]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]